Overcoming NA values in DESEq2 (outlier and filtering adjustments)
网页2019年11月21日 · 1) With Cooks cut off, these are my results; out of 598019 with nonzero total read count adjusted p-value < 0.05; LFC > 0 (up) : 965, 0.16%; LFC < 0 (down) : 111, 0.019%; outliers [1] : 12602, 2.1% ; low counts [2] : 0, 0%. A lot of the p values and padj are NA as expected. 2)Turning Cooks cut off to False gets these results; out of 598019 with ...
How do I create a volcano plot using bioinfokit?
网页2021年7月9日 · I then tried to create the volcano plot in the last line of code. import pandas as pd. import numpy as np. import bioinfokit. from bioinfokit import analys, visuz. panda_brie = pd.read_csv("C:\\Users\\amorgan\\Documents\\brie_gRNA_stats.csv", encoding='ISO-8859-1', low_memory=False) shape = panda_brie.shape.
mysqli::__construct(): (HY000/1045): Access denied for user 'lfc_site ...
网页The problem most likely doesn't lie with your credentials (if they work for Joomla and you have double-checked them) but with the hostname you provide or a server configuration or MariaDB user (lfc_site) permissions. You can try to change localhost in your code to 127.0.0.1 and see if it makes any difference.
wait for one fetch to finish before starting the next
网页Use a reduce instead of forEach, with .then(). The following will store the promise of the last fetch in acc (the accumulator parameter of reduce), and appends the new fetch inside of a then listener, to ensure that the previous fetch is finished: return acc.then(() => {. return fetch({. url: URL,
github - This repository is configured for Git LFS but 'git-lfs' was ...
网页2017年11月27日 · I think I may have solved it for people who may be using SourceTree. For me, since I installed SourceTree before git on a fresh machine, SourceTree was using an embedded version of git, which didn't have git lfs installed I guess.
python - Change plot axis with bioinfokit - Stack Overflow
网页2023年3月5日 · I tried adding a "fake" data point in which to extend the axis but this does not really work very well. Thanks. You're currently passing xlm=(-5.0,10.0,1) which tells bioinfokit to plot from -5 to 10 with intervals of 1. If you want -10 to 10, pass xlm=(-10.0,10.0,1) instead. If you want it to fit the data, don't pass the xlm parameter at all.
Working with original vectors within another class
网页2020年3月28日 · vector<Player> lfc = { p1,p2,p3,p4,p5 }; Team liverpool(lfc); vector<Player> rm = { p6,p7,p8,p9,p10 }; Team real_madrit(rm); Alright, we are getting to the heart of the problem. When it comes to change height of one player (method change_height), it does not print it out when I want to show the data of the team.
How to clone/pull a git repository, ignoring LFS?
网页2017年2月3日 · As mentioned in other answers, you can work around all this by removing the configuration for filter.lfs.*.In my case, I preferred to have clone and pull fail more gracefully without needing these extra steps each time, in case I forgot to install git-lfs or something like that.
How can I get differentially expressed genes to be color coded by ...
网页2021年6月6日 · I am making a volcano plot using ggplot2 and am trying to get upregulated genes to be red, downregulated to be blue, and non-significant to be black. I am trying to make a variable using an ifelse statement with 3 categories: up-regulated (LFC>=0.58 & FDR<=0.05), down-regulated (LFC<=0.58 & FDR<=0.05), and non-significant. Here is …
r - Calculate p-values for each group - Stack Overflow
网页Tumor_type Gene lfc p-value <fct> <chr> <dbl> <dbl> epithelial A -0.2191989 0.7404867 epithelial B -0.0995055 0.9125193 epithelial C -0.4724193 0.2834448 r dplyr